6 Genotype to Phenotype

6.1 On this page

Biological insights and take-home messages are at the bottom of the page at section Lesson Learnt: Section 6.3.

Here

6.2 Genome Domestication Signature

6.2.0.0.1 GENOME DOMESTICATION

6.3 Lessons Learnt

Based on the we have learnt:

6.4 Session Information

Note

R version 4.3.2 (2023-10-31)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: openSUSE Tumbleweed

Matrix products: default
BLAS/LAPACK: /home/andrea/miniforge3/envs/moai/lib/libmkl_rt.so.2;  LAPACK version 3.9.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=it_IT.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

time zone: Europe/Brussels
tzcode source: system (glibc)

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] treeio_1.26.0      stringr_1.5.1      reshape_0.8.9      RColorBrewer_1.1-3
 [5] pophelper_2.3.1    naturalsort_0.1.3  gridExtra_2.3      ggtreeExtra_1.12.0
 [9] ggtree_3.10.1      ggplot2_3.5.1      ggnewscale_0.5.0   aplot_0.2.4       
[13] ape_5.8-1         

loaded via a namespace (and not attached):
 [1] yulab.utils_0.2.0   generics_0.1.3      tidyr_1.3.1        
 [4] ggplotify_0.1.2     lpSolve_5.6.23      stringi_1.8.4      
 [7] lattice_0.22-6      digest_0.6.37       magrittr_2.0.3     
[10] evaluate_1.0.3      fastmap_1.2.0       plyr_1.8.9         
[13] jsonlite_1.8.9      combinat_0.0-8      purrr_1.0.2        
[16] scales_1.3.0        label.switching_1.8 lazyeval_0.2.2     
[19] cli_3.6.3           rlang_1.1.5         munsell_0.5.1      
[22] tidytree_0.4.6      withr_3.0.2         tools_4.3.2        
[25] parallel_4.3.2      dplyr_1.1.4         colorspace_2.1-1   
[28] vctrs_0.6.5         R6_2.5.1            gridGraphics_0.5-1 
[31] lifecycle_1.0.4     fs_1.6.5            htmlwidgets_1.6.4  
[34] ggfun_0.1.8         pkgconfig_2.0.3     pillar_1.10.1      
[37] gtable_0.3.6        glue_1.8.0          Rcpp_1.0.14        
[40] xfun_0.50           tibble_3.2.1        tidyselect_1.2.1   
[43] knitr_1.49          farver_2.1.2        htmltools_0.5.8.1  
[46] nlme_3.1-167        patchwork_1.3.0     rmarkdown_2.29     
[49] compiler_4.3.2