14  Figure S2

14.1 Figure S2 code

14.1.1 Panel A code

14.1.2 Merge

14.2 Figure S2 plot

14.3 Session Information

R version 4.3.3 (2024-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 24.04.3 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.12.0 
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0

locale:
 [1] LC_CTYPE=en_US.UTF-8    LC_NUMERIC=C            LC_TIME=C              
 [4] LC_COLLATE=en_US.UTF-8  LC_MONETARY=C           LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=C              LC_NAME=C               LC_ADDRESS=C           
[10] LC_TELEPHONE=C          LC_MEASUREMENT=C        LC_IDENTIFICATION=C    

time zone: Europe/Brussels
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] vegan_2.7-1        permute_0.9-8      umap_0.2.10.0      RColorBrewer_1.1-3
 [5] PCAtools_2.14.0    patchwork_1.3.1    mixOmics_6.26.0    lattice_0.22-5    
 [9] MASS_7.3-60.0.1    ggrepel_0.9.6      ggplot2_3.5.2      forcats_1.0.0     
[13] dplyr_1.1.4       

loaded via a namespace (and not attached):
 [1] tidyselect_1.2.1          farver_2.1.2             
 [3] fastmap_1.2.0             digest_0.6.37            
 [5] rsvd_1.0.5                lifecycle_1.0.4          
 [7] cluster_2.1.6             magrittr_2.0.3           
 [9] compiler_4.3.3            rlang_1.1.6              
[11] tools_4.3.3               igraph_2.1.4             
[13] yaml_2.3.10               knitr_1.50               
[15] askpass_1.2.1             S4Arrays_1.2.1           
[17] dqrng_0.4.1               rARPACK_0.11-0           
[19] htmlwidgets_1.6.4         reticulate_1.43.0        
[21] DelayedArray_0.28.0       plyr_1.8.9               
[23] abind_1.4-8               BiocParallel_1.36.0      
[25] withr_3.0.2               purrr_1.1.0              
[27] BiocGenerics_0.48.1       grid_4.3.3               
[29] stats4_4.3.3              beachmat_2.18.1          
[31] scales_1.4.0              dichromat_2.0-0.1        
[33] cli_3.6.5                 ellipse_0.5.0            
[35] rmarkdown_2.29            crayon_1.5.3             
[37] generics_0.1.4            RSpectra_0.16-2          
[39] reshape2_1.4.4            DelayedMatrixStats_1.24.0
[41] stringr_1.5.1             splines_4.3.3            
[43] zlibbioc_1.48.2           parallel_4.3.3           
[45] XVector_0.42.0            matrixStats_1.5.0        
[47] vctrs_0.6.5               Matrix_1.6-5             
[49] jsonlite_2.0.0            BiocSingular_1.18.0      
[51] IRanges_2.36.0            S4Vectors_0.40.2         
[53] irlba_2.3.5.1             tidyr_1.3.1              
[55] glue_1.8.0                codetools_0.2-19         
[57] cowplot_1.2.0             stringi_1.8.7            
[59] gtable_0.3.6              ScaledMatrix_1.10.0      
[61] tibble_3.3.0              pillar_1.11.0            
[63] htmltools_0.5.8.1         openssl_2.3.3            
[65] R6_2.6.1                  sparseMatrixStats_1.14.0 
[67] evaluate_1.0.4            png_0.1-8                
[69] corpcor_1.6.10            Rcpp_1.1.0               
[71] nlme_3.1-164              gridExtra_2.3            
[73] SparseArray_1.2.4         mgcv_1.9-1               
[75] xfun_0.52                 MatrixGenerics_1.14.0    
[77] pkgconfig_2.0.3